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MCP Examples
data-analysis
E2B Code Sandbox

E2B Code Sandbox MCP

E2B MCP provides isolated Python execution environments. Your AI can run actual code instead of just describing what code might do.

The real value emerges when you combine secure remote execution with Jan's flexible model selection. You can use local models for conversation and reasoning while offloading actual computation to E2B's sandboxes. This means you get the privacy and control of local models plus the computational power of cloud infrastructure, without the complexity of managing Python environments or dependencies locally.

Setup

Prerequisites

Configuration

  1. Enable MCP: Go to Settings > MCP Servers, toggle Allow All MCP Tool Permission ON

Turn on MCP

Don't forget that MCP gets enabled once you turn on Experimental Features in Jan's General settings.

  1. Get API Key: Sign up at e2b.dev (opens in a new tab), generate an API key

E2B API Key

Add a meaningful name to your key.

E2B MCP Server

  1. Add MCP Server: Click + in MCP Servers section

Configure:

  • Server Name: e2b-server
  • Command: npx
  • Arguments: @e2b/mcp-server
  • Environment Variables:
    • Key: E2B_API_KEY
    • Value: your-api-key

E2B MCP Server

  1. Verify: Check server shows as active

E2B MCP Server

Pre-installed Libraries

The sandbox includes these packages by default:

Data Analysis & Science:

  • pandas (1.5.3) - Data manipulation
  • numpy (1.26.4) - Numerical computing
  • scipy (1.12.0) - Scientific computing
  • scikit-learn (1.4.1) - Machine learning
  • sympy (1.12) - Symbolic mathematics

Visualization:

  • matplotlib (3.8.3) - Static plots
  • seaborn (0.13.2) - Statistical visualization
  • plotly (5.19.0) - Interactive charts
  • bokeh (3.3.4) - Web-ready visualizations

Data Processing:

  • requests (2.26.0) - HTTP requests
  • beautifulsoup4 (4.12.3) - HTML/XML parsing
  • openpyxl (3.1.2) - Excel files
  • python-docx (1.1.0) - Word documents

Text & NLP:

  • nltk (3.8.1) - Natural language processing
  • spacy (3.7.4) - Advanced NLP
  • textblob (0.18.0) - Text processing
  • gensim (4.3.2) - Topic modeling

Image & Audio:

  • opencv-python (4.9.0) - Computer vision
  • scikit-image (0.22.0) - Image processing
  • imageio (2.34.0) - Image I/O
  • librosa (0.10.1) - Audio analysis

Additional packages can be installed as needed.

Examples

For the following examples, we'll use Claude 4 Sonnet but you can use any local or remote model with tool calling capabilities you'd like.

Make sure you activate Tools on the model you're using.

E2B MCP Server

Basic Data Analysis

Start small. Open a new chat, confirm that the model has tools enabled and ask it to create a small dataset of 100 students with grades and study hours.

Chat and use E2B MCP


Create a small dataset of 100 students with grades and study hours.
Calculate the correlation and create a scatter plot.

The model will:

  1. Generate data with pandas (100 rows)
  2. Calculate correlation coefficient
  3. Create a matplotlib scatter plot
  4. Add trend line

Chat and use E2B MCP

Chat and use E2B MCP

⚠️

As of v0.6.5, Jan won't be able to display visualizations in the chat but we're to get this fixed for the next release.

Statistical Computing


Run a Monte Carlo simulation with 10,000 iterations to estimate π.

Expected output:

  • Numerical computation with numpy
  • Convergence plot showing estimate improvement
  • Final π estimate

For more intensive simulations, increase iterations gradually and monitor performance.

Machine Learning


Create a simple 2-class dataset with 200 samples. Train a logistic regression
model and visualize the decision boundary.

The model will:

  • Generate synthetic 2D classification data
  • Train a single scikit-learn model
  • Plot data points and decision boundary

Time Series Analysis


Generate daily temperature data for one year. Calculate moving averages
and identify seasonal patterns.

Output includes:

  • Line plot of temperature data
  • Moving average overlay
  • Simple seasonal decomposition

Scaling Up

Once basic examples work, you can increase complexity:

  • Larger datasets (1000+ samples)
  • Multiple models for comparison
  • Complex visualizations with subplots
  • Advanced statistical tests

The sandbox handles moderate computational loads well. For very large datasets or intensive ML training, consider breaking work into smaller chunks.

Chart Generation

E2B automatically detects and extracts charts from matplotlib code. Charts are returned as base64-encoded images and downloadable files.

Static Charts


import matplotlib.pyplot as plt
import numpy as np
x = np.linspace(0, 10, 100)
y = np.sin(x)
plt.figure(figsize=(10, 6))
plt.plot(x, y)
plt.title('Sine Wave')
plt.xlabel('x')
plt.ylabel('sin(x)')
plt.show()

E2B captures the plot and makes it available for download.

Interactive Charts

The system extracts chart data for frontend visualization:


plt.bar(['A', 'B', 'C'], [10, 20, 15])
plt.title('Sample Bar Chart')
plt.show()

Returns structured data:


{
"type": "bar",
"title": "Sample Bar Chart",
"elements": [
{"label": "A", "value": 10},
{"label": "B", "value": 20},
{"label": "C", "value": 15}
]
}

Supported chart types: line, bar, scatter, pie, box plots.

Available Tools

  • run_code: Execute Python code
  • install_package: Add Python packages
  • create_file: Save files to sandbox
  • read_file: Access sandbox files
  • list_files: Browse sandbox contents

Troubleshooting

Connection Issues:

  • Verify API key is correct
  • Check Node.js installation
  • Restart Jan if server won't start

Execution Problems:

  • Free sandboxes have 2 cores and 1GB RAM - start with small datasets
  • Large computations may time out or run out of memory
  • Scale up complexity gradually after testing basic examples
  • Some packages may require explicit installation

Package Installation:

  • Most data science packages install successfully
  • System dependencies may cause failures for some packages
  • Try alternative packages if installation fails
⚠️

E2B has computational and memory limits. Break large operations into smaller chunks if needed.

Use Cases

E2B is useful for:

  • Academic Research: Statistical analysis, data visualization, hypothesis testing
  • Data Science: Exploratory data analysis, model prototyping, result validation
  • Financial Analysis: Portfolio optimization, risk calculations, market simulations
  • Scientific Computing: Numerical simulations, mathematical modeling, algorithm testing
  • Prototyping: Quick algorithm validation, proof-of-concept development

The sandbox provides isolated execution without local environment setup or dependency management.

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